We offer a range of sequencing processing pipelines. We develop them using Nextflow workflow language.
For the end-users we offer Nextflow pipelines available to run on both Sanger LSF farm or OpenStack flexible compute environment. The pipelines can be run either by us or by the end-users themselves.
Here is the list of pipelines we develop:
- RNA-seq (both bulk and Smartseq2)
- Droplet based protocols (inDrop, Seq-Well, Drop-seq)
- 10X cellranger
If you would like to run
cellranger by 10X please put in a ticket for the NPG group by emailing to firstname.lastname@example.org and specify which version of the cellranger and the genome you would like to use.