We support a Jupyter Hub server running on Sanger Cloud. Jupyter allows you to run your analysis in multiple environments (
Julia, etc.) and also to create and share notebooks containing your analysis, code, equations and visualizations. We think this is an ideal environment for any kind of downstream analysis. For more details please refer to Jupyter Hub documentation.
How to get access¶
Our Jupyter Hub service is available in a web browser on any computer anywhere in the world. You will need to provide us with your GitHub ID to be able to login. Once we notify you that your account is created you can login using your GitHub credentials.
Before logging in to JupyterHub please read our instructions.
There are three flavours of Jupyter Hub that we provide. Please choose the one required for your needs and access ti via links below.
Please only use Large and Extra Large flavours when this much resources is really required because this might impact the availability of large instances to other users.
We provide some notebook templates with the pre-installed software. These are located in the
notebooks folder. Corresponding example data is located in the
data folder. Before running your analysis, please make a copy of a notebook template, save it to your home folder and work with the copy. At the moment we have the following notebook templates: